BtaEX6024123 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101304355-101305342:+
Coord C1 exon
chr5:101304355-101304375
Coord A exon
chr5:101304644-101304812
Coord C2 exon
chr5:101305258-101305342
Length
169 bp
Sequences
Splice sites
3' ss Seq
TACGATTATTGTGCCTGTAGGAC
3' ss Score
7.57
5' ss Seq
TCGGTATGC
5' ss Score
7.85
Exon sequences
Seq C1 exon
GTTCCACTAGTATATGTTGAG
Seq A exon
GACCCCAAAGGAAATCGCATCGCACAGTGGCAGAACCTCGAGGTAGAGAATGGCCTCCAGCAGTTGACCTTCCCCCTCTCATCAGAGCCCTTTCAGGGCTCCTATAAGGTGGTGGTACAGAAGGGATCAGGTGGGACTGCAGAGCACCCCTTCACCGTGGAGGAATTCG
Seq C2 exon
TGCTTCCTAAGTTTGAAGTACAAGTAAGAATGCCAAAGATAATCACCATCTTGGAAGAAGAGGTGCAAGTGTCCGTGTGCGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]