MmuEX6006768 @ mm9
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121591003-121592091:+
Coord C1 exon
chr6:121591003-121591023
Coord A exon
chr6:121591290-121591458
Coord C2 exon
chr6:121592007-121592091
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATTATGGCTATTTATTACAGGAT
3' ss Score
5.56
5' ss Seq
TTGGTACGG
5' ss Score
6.56
Exon sequences
Seq C1 exon
ATTCCTCTACTGTACATTCAG
Seq A exon
GATTCAAAAAAAAATCGCATTGCACAGTGGCAGAATTTCCGCTTAGAGGGTGGCCTCAAACAGCTGTCCTTCCCCCTCTCCTCAGAGCCCACTCAGGGCTCCTACAAGGTGGTGATACGTACAGAATCAGGCAGGACCGTCGAGCACCCCTTCTCTGTGAAGGAATTTG
Seq C2 exon
TGCTTCCCAAGTTTGAAGTCAAAGTTGCAGTACCAGAGACAATCACCATCCTGGAGGAAGAGATGAATGTGTCCGTGTGTGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: