GgaEX6003291 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79442589-79444428:-
Coord C1 exon
chr1:79444408-79444428
Coord A exon
chr1:79443212-79443380
Coord C2 exon
chr1:79442589-79442673
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTATATTTTTTCCCCTCAGGAT
3' ss Score
11.22
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TACCCTTTGATTGCAGTTCAG
Seq A exon
GATCCACAGAACAACAGGATCTTTCAGTGGCAAAATGTGACGTCAGAGATTAACATTGTCCAGATTGAATTCCCACTAACTGAAGAGCCTATACTAGGAAACTACAAAATTATTGTAACAAAGAAATCAGGAGAGAGAACAAGTCATTCATTCCTTGTGGAGGAATATG
Seq C2 exon
TGTTGCCAAAATTTGATGTTACAGTCACTGCACCAGGAAGTCTTACAGTCATGGATTCAGAATTGACAGTGAAAATCTGCGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]