GgaEX6003291 @ galGal4
Exon Skipping
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75800105-75801944:-
Coord C1 exon
chr1:75801924-75801944
Coord A exon
chr1:75800728-75800896
Coord C2 exon
chr1:75800105-75800189
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTATATTTTTTCCCCTCAGGAT
3' ss Score
11.22
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TACCCTTTGATTGCAGTTCAG
Seq A exon
GATCCACAGAACAACAGGATCTTTCAGTGGCAAAATGTGACGTCAGAGATTAACATTGTCCAGATTGAATTCCCACTAACTGAAGAGCCTATACTAGGAAACTACAAAATTATTGTAACAAAGAAATCAGGAGAGAGAACAAGTCATTCATTCCTTGTGGAGGAATATG
Seq C2 exon
TGTTGCCAAAATTTGATGTTACAGTCACTGCACCAGGAAGTCTTACAGTCATGGATTCAGAATTGACAGTGAAAATCTGCGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]