GgaEX0026911 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:2294623-2297176:-
Coord C1 exon
chr17:2297059-2297176
Coord A exon
chr17:2295512-2295662
Coord C2 exon
chr17:2294623-2294782
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCCCTGATCCTCAGGTC
3' ss Score
9.05
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TACGGCCTTGTTCTGGATGCTGGCCCATCCCGCACCATCCTGTTCATCTACCAGTGGACCACCACCAAGGCAAACAAGACCAGGGTGATCAAAGAATGTAGTTCCTGTACGGTGCAAG
Seq A exon
GTCCAGAAATCTCGAACTACTCACATTCTCCTCAGAAAGTAGGAAAGAGCTTGGATGCATGTTTGAACTGGGCCCAGAGCAAGATCCCGGCAGAGCAGCACAGCCAGACTCCCCTGTACCTGGGAGCAACCACCAGCACAAGGCAGCTGAA
Seq C2 exon
CCTCAGCCATCCCACCCGCTCTGACGATCTCCTTGCAGCCCTGACTGTGGCCCTGAAGTCATCCCCCTTTGACTTTCAGGGGGTACAAATCTTGTCCAGTCCAGATGAGGAAGCATTCAACTGGGTTGCTGTTAACTACGTTCTGGAGAACTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023909-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(15.9=100)
A:
PF0115012=GDA1_CD39=FE(20.4=100)
C2:
PF0115012=GDA1_CD39=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCCTTGTTCTGGATGCT
R:
ACAGCAACCCAGTTGAATGCT
Band lengths:
250-401
Functional annotations
There are 0 annotated functions for this event