GgaEX0026911 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr17:1889504-1894238:-
Coord C1 exon
chr17:1894125-1894238
Coord A exon
chr17:1890393-1890543
Coord C2 exon
chr17:1889504-1889584
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCCCTGATCCTCAGGTC
3' ss Score
9.05
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ATGTCTTGGCGTGAGCTCCTTCCCCCCTGGCTGGTGATCGTGGCAGGACTGACAGGCATCGTGCTGCTCTGCGTCTCCACCAAAGATGTGCCCATTGTCCCACTCAGGACCAAG
Seq A exon
GTCCAGAAATCTCGAACTACTCACATTCTCCTCAGAAAGTAGGAAAGAGCTTGGATGCATGTTTGAACTGGGCCCAGAGCAAGATCCCGGCAGAGCAGCACAGCCAGACTCCCCTGTACCTGGGAGCAACCACCAGCACAAGGCAGCTGAA
Seq C2 exon
GGGGTACAAATCTTGTCCAGTCCAGATGAGGAAGCATTCAACTGGGTTGCTGTTAACTACGTTCTGGAGAACTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023909_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.2=13.2)
A:
PF0115012=GDA1_CD39=FE(11.7=100)
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTGGCTGGTGATCG
R:
ACGTAGTTAACAGCAACCCAGT
Band lengths:
154-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]