GgaEX0027274 @ galGal3
Exon Skipping
Gene
ENSGALG00000006867 | QRICH1
Description
NA
Coordinates
chr12:11894481-11900930:+
Coord C1 exon
chr12:11894481-11894571
Coord A exon
chr12:11895372-11895565
Coord C2 exon
chr12:11895853-11900930
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTCTGATCTTCCTCATGCAGCCC
3' ss Score
8.33
5' ss Seq
AAGGCATCC
5' ss Score
0.58
Exon sequences
Seq C1 exon
TTACAGATGACATGTATGCAGAGCAGACTGAGAATCCAGAGAACCCCCTGAGGTGTCCGATAAAGCTGTATGACTTCTACCTCTTCAAATG
Seq A exon
CCCCCAGAGTGTGAAAGGCCGGAATGACACGTTTTACTTGACTCCGGAGCCAGTGGTGGCCCCCAACAGCCCTATCTGGTATTCCATCCAGCCGATCAGCAGAGAGCAGATGGAGCAGATGCTCACCCGGATCCTGGTGATACGAGAGATTCAGGAAGCTATTGCCGTGGCTAATGCCAGCACCATGCACTAAG
Seq C2 exon
AAAATATGAACTACAAGATTGGCCTGGATGACTGGGGCCTCTGTCTCCTTGGAGCACGTGCAGCCTAGAGGGCACAGAATGATGGATGGACCTGCTCAGCCAGTGGAAGAGAGGCAGGCATCTTCTTTTCTTGTGCTTGGACGTTAATTTGCTGTTGTCTTGGAAGGAAGAGGAGAGAGTGAACTACAATTGTCATTTATACAAAGAAAAAAAACAAACAATGATTTCTATTCAGACCTTTAAGTGACATTTTTAGATGTTAAAAGTACAAACTTTACCACACTCTTCTTTTTTGGCCTAATACTGAGGCCTTAAACCTTGAGGCTCCTGTGCCTGATGGAATTCTTGTAACATACACTTGTGTATCATATAAAGATACCACCCTGTTTCTCTTATGTATTCTTACTCTAGTTGTTTATTAAGAATGATGAGCACGTCTTTTCAACATGCCATTGAACAATGTGTCTTTATTTGGGGAAGAGTGAGCTGTGAGGGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867_MULTIEX1-9/9=8-C2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(18.2=100)
A:
PF120123=DUF3504=PD(28.5=72.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCAGAGAACCCCCTGAGG
R:
TTCACTCTCTCCTCTTCCTTCCA
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]