GgaEX0027274 @ galGal4
Exon Skipping
Gene
ENSGALG00000006867 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr12:11607476-11614488:+
Coord C1 exon
chr12:11607476-11607566
Coord A exon
chr12:11608367-11608560
Coord C2 exon
chr12:11608848-11614488
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTCTGATCTTCCTCATGCAGCCC
3' ss Score
8.33
5' ss Seq
AAGGCATCC
5' ss Score
0.58
Exon sequences
Seq C1 exon
TTACAGATGACATGTATGCAGAGCAGACTGAGAATCCAGAGAACCCCCTGAGGTGTCCGATAAAGCTGTATGACTTCTACCTCTTCAAATG
Seq A exon
CCCCCAGAGTGTGAAAGGCCGGAATGACACGTTTTACTTGACTCCGGAGCCAGTGGTGGCCCCCAACAGCCCTATCTGGTATTCCATCCAGCCGATCAGCAGAGAGCAGATGGAGCAGATGCTCACCCGGATCCTGGTGATACGAGAGATTCAGGAAGCTATTGCCGTGGCTAATGCCAGCACCATGCACTAAG
Seq C2 exon
AAAATATGAACTACAAGATTGGCCTGGATGACTGGGGCCTCTGTCTCCTTGGAGCACGTGCAGCCTAGAGGGCACAGAATGATGGATGGACCTGCTCAGCCAGTGGAAGAGAGGCAGGCATCTTCTTTTCTTGTGCTTGGACGTTAATTTGCTGTTGTCTTGGAAGGAAGAGGAGAGAGTGAACTACAATTGTCATTTATACAAAGAAAAAAAACAAACAATGATTTCTATTCAGACCTTTAAGTGACATTTTTAGATGTTAAAAGTACAAACTTTACCACACTCTTCTTTTTTGGCCTAATACTGAGGCCTTAAACCTTGAGGCTCCTGTGCCTGATGGAATTCTTGTAACATACACTTGTGTATCATATAAAGATACCACCCTGTTTCTCTTATGTATTCTTACTCTAGTTGTTTATTAAGAATGATGAGCACGTCTTTTCAACATGCCATTGAACAATGTGTCTTTATTTGGGGAAGAGTGAGCTGTGAGGGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(18.2=100)
A:
PF120123=DUF3504=PD(28.5=72.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCAGAGAACCCCCTGAGG
R:
TTCACTCTCTCCTCTTCCTTCCA
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]