GgaEX0027580 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1950574-1955848:-
Coord C1 exon
chr17:1953233-1955848
Coord A exon
chr17:1952056-1952115
Coord C2 exon
chr17:1950574-1950748
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGCCCAACCTTCAGCTT
3' ss Score
7.01
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
CCCCTCACGCACCCCGCCCGGCCCCGCGCCCCACACGTACCAGCCCGAGCGGTCCGATCTTGGGGGCCAGGGCGGAAGTGGCGCCGACCTCCCCGCCGGTGCAGCGCAGATACACTACGGGCACAGCAACGCTCAGTCAGCTCCACACCGCCATCCCCGCTCCCCCGACGCCCCGCCGTCCTCCCGACCCAACACGTACCGACTTTCACCTCGGTCGGATCGAACTTGGGCGGCATGGCGGCGGCGTGCGGCGCGGATGCCGATGGATGCTACCGGCTGCGGCCTGGCGGGTGGCAGAGAGGCTGCGAGCCGTGCGGGGGAGATATATATAGGCACCGAGATCTCGCGAGAGCTTGGCAGCGCGGGATCCGTCTCCCTCCCCTCCCTTCCTCTCTCCGCCCGCAGGAAACTCTATGGTGCGAGAGGGGGGCGCTCTGGCGTCTCGTCTCTGTAGTGTGGAGGCCCCGAGACGGGACGGGGCGTCATGACAGCGGGCGGCG
Seq A exon
CTTCTGCAGTTTGGGGTGAAAACTAAACTAACTGCCCACTATCCACATGGCTAATAGAAG
Seq C2 exon
AGGACAGCTCTGTAGTCCAGGTTCCACGTGCTCCAAGAGCCATCTGCCTTTATTTGTGCTGGTAGTTTGTGCCATTCAGACGGAGCTGTAGTCACAACTCAAGATGCCCCTTTTCTTCCGTAAGAAGAAACCCAGTGAAGATGCTCGGAAGCGCCTTGAATACCAAATGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCGTCTCGTCTCTGTAG
R:
TGGCACAAACTACCAGCACAA
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]