GgaEX0027580 @ galGal4
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr17:1553584-1555752:-
Coord C1 exon
chr17:1555703-1555752
Coord A exon
chr17:1555066-1555125
Coord C2 exon
chr17:1553584-1553758
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGCCCAACCTTCAGCTT
3' ss Score
7.01
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTAGTGTGGAGGCCCCGAGACGGGACGGGGCGTCATGACAGCGGGCGGCG
Seq A exon
CTTCTGCAGTTTGGGGTGAAAACTAAACTAACTGCCCACTATCCACATGGCTAATAGAAG
Seq C2 exon
AGGACAGCTCTGTAGTCCAGGTTCCACGTGCTCCAAGAGCCATCTGCCTTTATTTGTGCTGGTAGTTTGTGCCATTCAGACGGAGCTGTAGTCACAACTCAAGATGCCCCTTTTCTTCCGTAAGAAGAAACCCAGTGAAGATGCTCGGAAGCGCCTTGAATACCAAATGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGTGGAGGCCCCGAG
R:
CTACAGCTCCGTCTGAATGGC
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]