GgaEX0027840 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183367784-183386320:-
Coord C1 exon
chr1:183386108-183386320
Coord A exon
chr1:183383626-183384954
Coord C2 exon
chr1:183367784-183367900
Length
1329 bp
Sequences
Splice sites
3' ss Seq
GCATTGTTCTTTTGTCACAGCTA
3' ss Score
7.87
5' ss Seq
AAGATGTGC
5' ss Score
-1.88
Exon sequences
Seq C1 exon
ATTCGTCATGAAGTTAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTCAATAGATACAGGATGGCAAATGGTTTAATAATGAATTGCTGTGAGCACTGTGGGGAGTATTTGCCCAGTAAAGGAGCTGGAAACAATACTCTTACTATTGATGGTCAGCAGAAAAGATTCTGCTGTCAGAACTGCGTTGGTGAATACAAGCAG
Seq A exon
CTAATCCAAAAGGGACAGGATAGGTTTCCAAGATACTAAAAACATAGGCATGCCCAGAAGCCATGGGAAGACTTGAAGAAACGTTGAATACTGTCTCTCGAAGAAACAAAAAGGCATGAGATTAACTTTGAACTTGAGACATTCTCACACAACCAGTATAACATGCACTGCATATGGAATTAAGAAATGAACGTGGAATTTTGAGAGGTTGAATGATAAATCTGTACTTCCATTACAGACTGTACTCTGTTCAGATGTTTTTTTTTACATTGTGTTTAGATGTGTATTTGAGACTGGGAAGGGTGTGTGGGTAGCAAGTTGTATATTCTAGTTTGATTTGGGGAAGAGGAACAGTTTGCAGAACATTGGAATCTTCGTAAGTAGTGGAGGAAATTGCCCATTATTGTGCGGATCCTTAAGAGAAGCTTTAAAATTCAGAAACGCACACTGTTTTGGTGCATTCAGTCCTGACAGGGGGCTTTATTCAAACAAGTTCTTCATATTTTTTTTCTTGGTGCTGGGAAACTGTAACAGGCTGTGAGAAGCTTAAGTCTAGTGATTATGTACATCTTGTTTGGACTGGTGATTAAATGTAATTAATCACTGGTAGATTTCAGATGCTCACGGAGCATGAGATTTTGGGGGTGTTTTTAAGAAAACTAATTTTGAATTAGGAGCTTTTTTAGTATGTTGTTGTAGGTGTCGAAGTTGCTCAGGATGCAGCAGTTAGTTTTTCAAAGTAACTAGTTGTCTAGCGAGGTTCATTTAAGCTTCCATTTTCATTAAGGTTTTTGAACTGAATGTATTCAAGGAATTCTGTTTTTGAAAAGGAATTTAGATTTTGGAAAACGTCACTGAAAACGCATTGGGCCGTGATGGGTAAATTATAGGTTTCTTTCTTCAGTAGTAACATGGAAATCTTTGATTCAAATATGGCTGTTAAGGGAAGGAGAGAATATGGGAGTGTTGCTGTTACATACTGAAATAAACACTGGAGTCAATAATGTAGGAAAAGTTGATGTCATTTGATTACAGTGTTGTTCTATACAACTTGTTACTGTGTGTCACGTAAGTTTCAGCAAATGTTTTCTTACCTTACTGTAAAATAAATAGGTTTTGCTGGTATGAGCTTTGTGTTAAGCAGTTTATATTGTAAATGTCATAAGACTATCACTATGCTTTACTTTTGTTGCAGCAATAAACAAAAACTGGTTTTTATTACTTGTACCTATCTATATACCTCATCCCTATTTTTTGAATAAATATTACACTGATTTGAACAAGCAATTTTTATCAACTTATCATGGACAGTTTTTCTTCTTTTTTAAG
Seq C2 exon
GCTCTCAGTGATCAGTCTTCAACAAATGGTCAGTTTGTGTCTCCTGGTGATATTCAGTTGAAATGCAATTATTGCAAGAGTTCTTTTTGTTCAAAGCCAGAAGTGCTAGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139_MULTIEX1-1/5=C1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NO
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAATATGACTCATAAGCTGTGCA
R:
CTCCCATTCTAGCACTTCTGGC
Band lengths:
310-1639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]