GgaEX0025500 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183367784-183386320:-
Coord C1 exon
chr1:183386108-183386320
Coord A exon
chr1:183373501-183373616
Coord C2 exon
chr1:183367784-183367900
Length
116 bp
Sequences
Splice sites
3' ss Seq
AAACTACGTTTTTCTTTTAGGTA
3' ss Score
10.34
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
ATTCGTCATGAAGTTAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTCAATAGATACAGGATGGCAAATGGTTTAATAATGAATTGCTGTGAGCACTGTGGGGAGTATTTGCCCAGTAAAGGAGCTGGAAACAATACTCTTACTATTGATGGTCAGCAGAAAAGATTCTGCTGTCAGAACTGCGTTGGTGAATACAAGCAG
Seq A exon
GTATGGAAATTATTTGCCACTTTTGTAAACGAAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAGTTCCAGTTGTGTAGCTAAATTTCAG
Seq C2 exon
GCTCTCAGTGATCAGTCTTCAACAAATGGTCAGTTTGTGTCTCCTGGTGATATTCAGTTGAAATGCAATTATTGCAAGAGTTCTTTTTGTTCAAAGCCAGAAGTGCTAGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
PF064679=zf-FCS=WD(100=92.3)
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAAGCTGTGCAGTGACCAC
R:
TCAACTGAATATCACCAGGAGACAC
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]