GgaEX0025500 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178311667-178318450:-
Coord C1 exon
chr1:178318300-178318450
Coord A exon
chr1:178317384-178317499
Coord C2 exon
chr1:178311667-178311783
Length
116 bp
Sequences
Splice sites
3' ss Seq
AAACTACGTTTTTCTTTTAGGTA
3' ss Score
10.34
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
AAATATGGCAAATTAACATCTTGTACTGGCTGCAGAGCTCAGTGCAGGTTTTTTGACATGACTCAGTTCATAGGACCTAATGGATATTTGGAGCCATACTGCTCAACTGCATGCATGAACACACACATACCAAAATATGCAGAATCACGAA
Seq A exon
GTATGGAAATTATTTGCCACTTTTGTAAACGAAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAGTTCCAGTTGTGTAGCTAAATTTCAG
Seq C2 exon
GCTCTCAGTGATCAGTCTTCAACAAATGGTCAGTTTGTGTCTCCTGGTGATATTCAGTTGAAATGCAATTATTGCAAGAGTTCTTTTTGTTCAAAGCCAGAAGTGCTAGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'33-30,'33-29,34-30
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4)
A:
PF064679=zf-FCS=WD(100=92.3)
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTACTGGCTGCAGAGCTC
R:
TCCCATTCTAGCACTTCTGGCT
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]