HsaEX6039453 @ hg38
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20026612-20031435:+
Coord C1 exon
chr13:20026612-20026762
Coord A exon
chr13:20027203-20027318
Coord C2 exon
chr13:20031319-20031435
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATGTACCTTTTCTTTCCTAGGTT
3' ss Score
11
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AAATATGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGTATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq A exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
Seq C2 exon
GCTCTAAGTATGCAGTCATCTCCAAATGGCCAGTTTGTAGCGCCAAGTGATATTCAGTTGAAATGCAACTACTGCAAAAATTCCTTTTGTTCAAAACCAGAAATCCTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'39-41,'39-37,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
PF064679=zf-FCS=PD(90.2=94.9)
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTTGTACTGGTTGCCGA
R:
AGGATTTCTGGTTTTGAACAAAAGGA
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains