DreEX6035993 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21634376-21635201:-
Coord C1 exon
chr9:21635054-21635201
Coord A exon
chr9:21634619-21634734
Coord C2 exon
chr9:21634376-21634498
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTTTTGTATTTGTAGATT
3' ss Score
8.47
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ACTCATGGAAAGATAGTGCAGTGTAGTGGGTGTAAGGTGATGTGCAGGTCATTTGATGCCACTCAGTGCATCGGGGCAAATGGAGCCATGGAGTCTTACTGCACCACAGCCTGTATGACCAAGAGCAAATTCACAGCTGCTGCACAGA
Seq A exon
ATTCTGAGCCATCGTGCCACTTCTGTAAGAGAAATGCATTACCTCAGTATCAGGCAACTTTACCTGAAGGAAAGGTTTTGAGCTTTTGCAGTTCACAGTGTGTCACCAAGTTTCAG
Seq C2 exon
AATGCCACAATCCAAACATCAACCAATGGGCAACTTCCTGCTTCAGCTTCTGAAGACATCCAGCTGAAGTGTAACTATTGTCGCAGTTCTTTCAGCCTGAAGCCAGAGGTTCTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'13-8,'13-7,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=94.9)
C2:
PF064679=zf-FCS=PU(60.0=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTGTAGTGGGTGTAAGG
R:
CCTCTGGCTTCAGGCTGAAAG
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]