MmuEX6041798 @ mm10
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56920587-56925957:+
Coord C1 exon
chr14:56920587-56920737
Coord A exon
chr14:56921502-56921617
Coord C2 exon
chr14:56925841-56925957
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATGTATCTTTTCTCTTATAGGTT
3' ss Score
12.11
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AAATATGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGCATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGCATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq A exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTATAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
Seq C2 exon
GCTCTAAGCATGCAGTCATCTCCAAATGGCCAGTTTGTAGCACCCAGTGATATTCAGCTGAAATGCAACTACTGTAAAAATTCCTTTTGTTCAAAACCAGAAATCTTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
PF064679=zf-FCS=PD(90.2=94.9)
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGGTTGCCGAACACAGT
R:
CTCCCATTCCAAGATTTCTGGT
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types