RnoEX0102019 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37182107-37196123:+
Coord C1 exon
chr15:37182107-37182319
Coord A exon
chr15:37192763-37192878
Coord C2 exon
chr15:37196007-37196123
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATATATCTTTTCTCTTATAGGTT
3' ss Score
11.17
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATTCGCCATGAAGTTAGTTTTAAAAACATGACTCATAAGCTGTGCAGTGACCACTGCTTTAACAGATACAGAATGGCCAATGGTCTGATAATGAATTGCTGTGAACAGTGTGGAGAATATTTGCCCAGTAAAGGTGCTGGAAATAATGTTTTGGTGATTGATGGTCAGCAGAAAAGATTTTGCTGTCAGAGTTGTGTCAGTGAATACAAACAG
Seq A exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACGATGCCTGATGGAAAACTGTATAATTTTTGCAATTCTAGTTGTGTGGCTAAATTTCAG
Seq C2 exon
GCTCTAAGCATGCAGTCATCTCCAAATGGCCAGTTTGTAGCACCTAGTGATATTCAGTTGAAATGCAACTACTGTAAAAATTCCTTTTGTTCAAAACCAGAAATCTTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
PF064679=zf-FCS=PD(90.2=94.9)
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACATGACTCATAAGCTGTGCA
R:
TCACTAGGTGCTACAAACTGGC
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]