GgaEX0027839 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178317384-178330203:-
Coord C1 exon
chr1:178329991-178330203
Coord A exon
chr1:178318300-178318450
Coord C2 exon
chr1:178317384-178317499
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTTTTATGTTTTAGAAA
3' ss Score
10.76
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATTCGTCATGAAGTTAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTCAATAGATACAGGATGGCAAATGGTTTAATAATGAATTGCTGTGAGCACTGTGGGGAGTATTTGCCCAGTAAAGGAGCTGGAAACAATACTCTTACTATTGATGGTCAGCAGAAAAGATTCTGCTGTCAGAACTGCGTTGGTGAATACAAGCAG
Seq A exon
AAATATGGCAAATTAACATCTTGTACTGGCTGCAGAGCTCAGTGCAGGTTTTTTGACATGACTCAGTTCATAGGACCTAATGGATATTTGGAGCCATACTGCTCAACTGCATGCATGAACACACACATACCAAAATATGCAGAATCACGAA
Seq C2 exon
GTATGGAAATTATTTGCCACTTTTGTAAACGAAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAGTTCCAGTTGTGTAGCTAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'28-29,'28-28,33-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
PF064679=zf-FCS=PD(95.3=80.4)
C2:
PF064679=zf-FCS=WD(100=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAGCTGTGCAGTGACCACT
R:
GTTTTCCATCAGGCATTGTGGC
Band lengths:
255-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]