DreEX0087946 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21634619-21637240:-
Coord C1 exon
chr9:21637028-21637240
Coord A exon
chr9:21635054-21635201
Coord C2 exon
chr9:21634619-21634734
Length
148 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTCTCTTTCCACAGACT
3' ss Score
10.49
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATTCGGCATGAGGTGAGCATCAAGAATGTGACTCACAAGATTTGCAGTGATGCGTGCTTTAATCGCTACCGTATGGCTAACGGGCTAGTCATGAACTGCTGCGAACAGTGTGGGAACTACCTGCCTAGTCGTGCCACGGCGAACCACGTTTTACTCATAGACGGCCAGCAGAAACGCTTTTGCTGTCAAAATTGCATCAGGGACTATAAACAG
Seq A exon
ACTCATGGAAAGATAGTGCAGTGTAGTGGGTGTAAGGTGATGTGCAGGTCATTTGATGCCACTCAGTGCATCGGGGCAAATGGAGCCATGGAGTCTTACTGCACCACAGCCTGTATGACCAAGAGCAAATTCACAGCTGCTGCACAGA
Seq C2 exon
ATTCTGAGCCATCGTGCCACTTCTGTAAGAGAAATGCATTACCTCAGTATCAGGCAACTTTACCTGAAGGAAAGGTTTTGAGCTTTTGCAGTTCACAGTGTGTCACCAAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'12-7,'12-6,13-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NO
C2:
PF064679=zf-FCS=WD(100=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAACGGGCTAGTCATGA
R:
GGTGACACACTGTGAACTGCA
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]