RnoEX0102018 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37182107-37196123:+
Coord C1 exon
chr15:37182107-37182319
Coord A exon
chr15:37191949-37192099
Coord C2 exon
chr15:37196007-37196123
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTTCAAATTTTAGAAG
3' ss Score
7.32
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATTCGCCATGAAGTTAGTTTTAAAAACATGACTCATAAGCTGTGCAGTGACCACTGCTTTAACAGATACAGAATGGCCAATGGTCTGATAATGAATTGCTGTGAACAGTGTGGAGAATATTTGCCCAGTAAAGGTGCTGGAAATAATGTTTTGGTGATTGATGGTCAGCAGAAAAGATTTTGCTGTCAGAGTTGTGTCAGTGAATACAAACAG
Seq A exon
AAGTACGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGCATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGCATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq C2 exon
GCTCTAAGCATGCAGTCATCTCCAAATGGCCAGTTTGTAGCACCTAGTGATATTCAGTTGAAATGCAACTACTGTAAAAATTCCTTTTGTTCAAAACCAGAAATCTTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACATGACTCATAAGCTGTGCA
R:
TCACTAGGTGCTACAAACTGGC
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]