BtaEX0041032 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36416575-36425748:-
Coord C1 exon
chr12:36425677-36425748
Coord A exon
chr12:36420228-36420378
Coord C2 exon
chr12:36416575-36416691
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTTTCAATTTTTAGAAA
3' ss Score
9.98
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTAGGTAGCCATCCAGGCTTCCTGAAGGAGGTTCGAGATCACACACCAGACTCTTTCCTCACGCAGCCTGAG
Seq A exon
AAATATGGAAAACTGACCACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGGTATATGGAGCCATATTGTTCAACTGCTTGCATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq C2 exon
GCTCTCAGCATGCAGTCGTCTCCCAACGGCCAGTTTGTAGCGCCAAGTGATATTCAATTGAAGTGCAACTATTGCAAAAACTCTTTCTGTTCAAAGCCAGAAATCTTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403_MULTIEX3-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(0.1=0.0)
A:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTGAAGGAGGTTCGAG
R:
TCCCATTCCAAGATTTCTGGCT
Band lengths:
172-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development