HsaEX0072883 @ hg19
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20593687-20601458:+
Coord C1 exon
chr13:20593687-20593758
Coord A exon
chr13:20600752-20600902
Coord C2 exon
chr13:20601343-20601458
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTTATGTTTCAAATTTTAGAAA
3' ss Score
8.91
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTAGGTAGCCATCCAAGCTTCCTGAAGGAGGTTCGAGATCACATGCAGGACTCTTTCTTAATGCAGCCTGAG
Seq A exon
AAATATGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGTATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq C2 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'13-15,'13-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(0.1=0.0)
A:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGTAGCCATCCAAGCTTCC
R:
TGAAATTTAGCCACACAACTGGA
Band lengths:
187-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)