GgaEX0027853 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24085844-24087666:+
Coord C1 exon
chr1:24085844-24085971
Coord A exon
chr1:24086067-24086755
Coord C2 exon
chr1:24087595-24087666
Length
689 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAAACATTACAGCAGAGC
3' ss Score
0.91
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATAAATGTGTTTTAGAAACTACCAGCTTGATAGAAAAGACAGCATATGAAAAGCAGACTGACAAAGCAGAAATTTCTCATCAGGAAACCCTAGCAGAAAATGAGGAATCCCACAGTGCTGACAAGCA
Seq A exon
AGCTGAAGCAGCTGTTTGGTGAAATTAATGAATCTGAGAAAGCTACATCCCTTGTGGCAGAAGTGTCAGAAGATGACTTCAATGAAGAATTGAAGAGTTTTCGTGTTTCATCTTGTGCGACAGAATCAAGTAATAAGTTAGAAAGTAAAGGTGAATTTGGAGACATGAAACTTAACGTAGACCTGAAAGAGCCCAAAACGGAAATTGTAATTCCGAGTCTCGGTGTCCTTCCTGATCACAATAACTTAAATGCAAACGTGGAAAATACCTGGAGTACAGATGAAGAAGACTGCACTAATTACACAGATAATACAAATGTACCTCTAGCAAAAGGAGAGGAAATGGAAGAAAATGAGAATGGGATTAGTAAGAGTGTAGAGGGAAGTCCTGAATATTCCCCGAGATATTGTTTAAAAACAAATATTTTGGATGACATTTCTAGTATTCTTCCTAAAGTAAGACCTATTTCCACAAATGATGGAAGTACACTTGATTTTATAAGAGAGAAGAAATTTGGCAAGGACGTCTGTCTTAGTGACAGTGTTTCCAGAGACTGCTTCATCAAAAACAAGGAAATAGGAGAAAAAGAAATTGAAAATCTTTTTCCACATGCTCAGCAACCTTGTGGCATGCTGAAAAGGAATCTGGATGAAGAATTAAAACAAGATGTGGAAAGATTTAAGAGTAAG
Seq C2 exon
GTTGAGAAAGAAAAAAGGAAGCAGAAACATTTCAAAGTGCAAGCAGTGGAGAAACAGGAAGACCTTGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_MULTIEX3-6/6=5-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.708
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATGTGTTTTAGAAACTACCAGCT
R:
TTTATCAAGGTCTTCCTGTTTCTCCA
Band lengths:
198-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]