GgaEX0027853 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26110701-26114193:+
Coord C1 exon
chr1:26110701-26110786
Coord A exon
chr1:26112225-26113136
Coord C2 exon
chr1:26113976-26114193
Length
912 bp
Sequences
Splice sites
3' ss Seq
TCTTTACCTGCTTACTTAAGGAT
3' ss Score
5.3
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGAGTGCTCAGAATCTGTCTTTCATGTGCCGTCATCAGCTGAAAAAGGGATGGTCAAGGATGCCATTGAAAACTATGGGAGACGG
Seq A exon
GATAAATGTGTTTTAGAAACTACCAGCTTGATAGAAAAGACAGCATATGAAAAGCAGACTGACAAAGCAGAAATTTCTCATCAGGAAACCCTAGCAGAAAATGAGGAATCCCACAGTGCTGACAAGCAGTTAAGTCTAAAGCCGTGGGAAGAAAGATATGAAAGAATGTGGGTTGAAAAAGAGAAAAGGGAGTTGAAAACAAATTTTAAAAACATTACAGCAGAGCTGAAGCAGCTGTTTGGTGAAATTAATGAATCTGAGAAAGCTACATCCCTTGTGGCAGAAGTGTCAGAAGATGACTTCAATGAAGAATTGAAGAGTTTTCGTGTTTCATCTTGTGCGACAGAATCAAGTAATAAGTTAGAAAGTAAAGGTGAATTTGGAGACATGAAACTTAACGTAGACCTGAAAGAGCCCAAAACGGAAATTGTAATTCCGAGTCTCGGTGTCCTTCCTGATCACAATAACTTAAATGCAAACGTGGAAAATACCTGGAGTACAGATGAAGAAGACTGCACTAATTACACAGATAATACAAATGTACCTCTAGCAAAAGGAGAGGAAATGGAAGAAAATGAGAATGGGATTAGTAAGAGTGTAGAGGGAAGTCCTGAATATTCCCCGAGATATTGTTTAAAAACAAATATTTTGGATGACATTTCTAGTATTCTTCCTAAAGTAAGACCTATTTCCACAAATGATGGAAGTACACTTGATTTTATAAGAGAGAAGAAATTTGGCAAGGACGTCTGTCTTAGTGACAGTGTTTCCAGAGACTGCTTCATCAAAAACAAGGAAATAGGAGAAAAAGAAATTGAAAATCTTTTTCCACATGCTCAGCAACCTTGTGGCATGCTGAAAAGGAATCTGGATGAAGAATTAAAACAAGATGTGGAAAGATTTAAGAGTAAG
Seq C2 exon
GTTGAGAAAGAAAAAAGGAAGCAGAAACATTTCAAAGTGCAAGCAGTGGAGAAACAGGAAGACCTTGATAAATTAAATACACCAGCAGGCAATATTACCAATCAACCAGTAAAAGAAAAGCTTGCTCTAAGGAAGAATGAAAAAATGACAGAAGAAAAACACACAAAGAATTTTTCATCTGAGGAGAGACCAAAATTAGTTGAAATGCCAATAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTGCTCAGAATCTGTCT
R:
TGGCATTTCAACTAATTTTGGTCTCT
Band lengths:
296-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]