HsaEX0004405 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27337730-27342319:-
Coord C1 exon
chr10:27342249-27342319
Coord A exon
chr10:27339988-27341073
Coord C2 exon
chr10:27337730-27337908
Length
1086 bp
Sequences
Splice sites
3' ss Seq
TCCGTACTTGATTACTCAAGGAT
3' ss Score
2.82
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
CTGAACATGACTTAGAAGTAGCATCAGAAGAAGAGCAAGAAAGGGAAGGGAGTGAAAATAACCAGCCACAG
Seq A exon
GATAAAGTTATTTTAAAAACATGCACCCTGACAGAAAAGACATCTGAAAAACAAAACAAGCAAATTAATCGTCCACTTTCATGTCTGCAAAAGATGTCTCAAGAACCAGAACTGAATAAGGAGTGTGATAGAGAGGATGTATCTGTATATTCAGGACTTCCTTGTGTGCAAAATGATGAAGAAATGTGGACCAAACAAGGCAAATTAGAGTGGAAAAATAACTTAAAACTCATCACAAATGAGTTAAAGCAGAGCTGTGGTGAAACTTGTGAAAAATACAAAATTACTGCTTCTCCTGGGGAAGAGTCACTACATGATAACTCTAAAGGAGGCACAAACTTAAAGGAAATACCTTCTTCTTTGACAAATAATATACTTGATTGCGATGAAAAAGATTCTCCTGTCTCTGTACTATTCCAGGCATTGCCTGAACAAAAAGTACTCAGTCTCGAAAATGGCTTTTCATTTCCTTCATACTCTGGGTCCCCAGAATATGCTTGCCAGTCATCTTCTAAGCCTTATTTAAATGAAAATAAATTAGGCCATGAAAATGTTAACAAACCAGACACTGAACATGTTTTTAACACAGATGAGAATTTTTATAATGATACAGAAAATAAAAAAGTAAGGAACCCAGAAGTAGTTACAGGTGTAATGAAAGAAGAGTTTGATAAGACAAAAAATATGAACCGAAATACCACTAACTGGAAATTAGACATCAGACGTGTGCCTCAGTATAGTGATCCAAAAAGACCTTTTGATTTGATCTGCTCCAAAGAAATGAATCATATGTTTCACATAAAAAGGCATAGTATTTCTGCTGGTACAGACGCTTACAAGAAAACAAAACCAATACAGAACTTGTTCCAGAAGCCATTATATGATCATTGCAGTGCTAATAACTATAAAAGCATGGAACCTGAATTAGAAAATGTGAGGTCTTCTCCACCACGTGGTGACAGAACATCAAAAGTATCTCTAAAAGAAGAATTACAGCAAGATATGCAAAGGTTTAAAAATGAGATAGGCATGTTAAAAGTAGAGTTCCAGGCTTTGGAGAAAGAAAAAGTCCAACTTCAAAAAGAG
Seq C2 exon
GTTGAAGAAGAAAGGAAAAAACACAGAAATAATGAAATGGAAGTATCAGCAAACATACATGATGGTGCTACTGATGATGCTGAAGATGATGATGATGATGATGGATTAATTCAAAAAAGAAAGAGTGGAGAAACTGATCATCAGCAATTTCCCAGGAAGGAAAATAAAGAGTATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=0.566 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACATGACTTAGAAGTAGCATCA
R:
GCATACTCTTTATTTTCCTTCCTGGG
Band lengths:
246-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)