GgaEX0027910 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79186849-79189480:+
Coord C1 exon
chr1:79186849-79186994
Coord A exon
chr1:79188765-79188914
Coord C2 exon
chr1:79189358-79189480
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCTATGTTCTTCACATCCAGGCA
3' ss Score
7.83
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGCTGAAAGGCTTCTTCTCCATCCCTGTTACCTTCAGCTCAGTCTATGCTCCAACTTCAACACTTATTGTTTATGTTATCTTCCCTAATGGGAAAACCATCGCAGATTCTGCTGTCTTCAGTGTCTCTATGTGTTTCAGAAATAAG
Seq A exon
GCAGAGCTGAGCTTCTCAGTGCCCAAGATTCTTCCTGGTTCAGAGGTTAATCTCCACCTGCAGGCAGCACCTGGGTCTACATGTGCTGTCTGGGCTGTGGATCAGACTGTCTTTTTGCTGAAGCCAGAAAAAGAGCTCAGCCACTCTATG
Seq C2 exon
ATCTATGGGCTCTTTCCATCTATTCCATCTACATACTCCGGGTATCCTCATCAAGTGTCTGAAGATGACAATTCATGCGGGTTCCAAAATTCTGATCAGCCTGATGTGTTTACAGCATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-10/25=9-11
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.8=100)
A:
PF077039=A2M_N_2=PD(45.3=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTCTTCTCCATCCCTGT
R:
TGCTGTAAACACATCAGGCTGA
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]