GgaEX0027910 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75544476-75547107:+
Coord C1 exon
chr1:75544476-75544621
Coord A exon
chr1:75546392-75546541
Coord C2 exon
chr1:75546985-75547107
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCTATGTTCTTCACATCCAGGCA
3' ss Score
7.83
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGCTGAAAGGCTTCTTCTCCATCCCTGTTACCTTCAGCTCAGTCTATGCTCCAACTTCAACACTTATTGTTTATGTTATCTTCCCTAATGGGAAAACCATCGCAGATTCTGCTGTCTTCAGTGTCTCTATGTGTTTCAGAAATAAG
Seq A exon
GCAGAGCTGAGCTTCTCAGTGCCCAAGATTCTTCCTGGTTCAGAGGTTAATCTCCACCTGCAGGCAGCACCTGGGTCTACATGTGCTGTCTGGGCTGTGGATCAGACTGTCTTTTTGCTGAAGCCAGAAAAAGAGCTCAGCCACTCTATG
Seq C2 exon
ATCTATGGGCTCTTTCCATCTATTCCATCTACATACTCCGGGTATCCTCATCAAGTGTCTGAAGATGACAATTCATGCGGGTTCCAAAATTCTGATCAGCCTGATGTGTTTACAGCATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'26-23,'26-20,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.8=100)
A:
PF077039=A2M_N_2=PD(25.8=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTCTTCTCCATCCCTGT
R:
TGCTGTAAACACATCAGGCTGA
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]