GgaEX0027917 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79266009-79267868:+
Coord C1 exon
chr1:79266009-79266090
Coord A exon
chr1:79266174-79266330
Coord C2 exon
chr1:79267794-79267868
Length
157 bp
Sequences
Splice sites
3' ss Seq
TATCTGTGCTCTGCCTACAGGCT
3' ss Score
9.86
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTACCAGCGTCAGCTGCTCTACAAACATGATGATGGCTCCTACAGTGCCTTTGGGAAGTCTGACACCCAGGGCAACACATG
Seq A exon
GCTGACAGCTTTTGTGGCCAGGTCCTTTGGGCAGGCCAGCTCTTACATTTACATCAATAAAGATCACGTACAGGATGCTGTGCTCTGGCTGCAGAAGCATCAGTTATCCAATGGTTGCTTCCAGAGTGTGGGGAAGCTCTTCAATAATGACTTGAAG
Seq C2 exon
GGTGGTGTGGATGATACAATCTCATTAACAGCCTATGTCGCTGCTGCCCTTCTTGAGCTCCAATTGGAGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
PF076789=A2M_comp=FE(21.8=100)
C2:
PF076789=A2M_comp=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAGCTGCTCTACAAACA
R:
ATTGGAGCTCAAGAAGGGCAG
Band lengths:
139-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]