GgaEX0027917 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75619100-75620958:+
Coord C1 exon
chr1:75619100-75619181
Coord A exon
chr1:75619265-75619421
Coord C2 exon
chr1:75620884-75620958
Length
157 bp
Sequences
Splice sites
3' ss Seq
TATCTGTGCTCTGCCTACAGGCT
3' ss Score
9.86
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTACCAGCGTCAGCTGCTCTACAAACATGATGATGGCTCCTACAGTGCCTTTGGGAAGTCTGACACCCAGGGCAACACATG
Seq A exon
GCTGACAGCTTTTGTGGCCAGGTCCTTTGGGCAGGCCAGCTCTTACATTTACATCAATAAAGATCACGTACAGGATGCTGTGCTCTGGCTGCAGAAGCATCAGTTATCCAATGGTTGCTTCCAGAGTGTGGGGAAGCTCTTCAATAATGACTTGAAG
Seq C2 exon
GGTGGTGTGGATGATACAATCTCATTAACAGCCTATGTCGCTGCTGCCCTTCTTGAGCTCCAATTGGAGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
PF076789=A2M_comp=FE(21.8=100)
C2:
PF076789=A2M_comp=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAGCTGCTCTACAAACA
R:
ATTGGAGCTCAAGAAGGGCAG
Band lengths:
139-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]