GgaEX0028163 @ galGal4
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3502618-3505995:-
Coord C1 exon
chr24:3505823-3505995
Coord A exon
chr24:3503742-3503988
Coord C2 exon
chr24:3502618-3502731
Length
247 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTCTGCCTGTTGCAGGCT
3' ss Score
6.58
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGGAGAACGAGTTCATCCTGTACGCCACCCGCTACTCCATCCACCGCTACGACCTCGCCTCGGGGCTCAGCCAGGAGCTGCCGCTGGCCGGGCTGCGCGGGGCAGTCGCGCTCGACTTTGACTATGAGCACAACTGCCTCTACTGGGCTGACGTCACGCTGGACATCATCCAG
Seq A exon
GCTGATGTTCTGGACGGACTGGGGAGACTCCAGGCCTGGCATTTACAGAAGTGACATGGATGGCTCCTTGGCTGCCTGCATCGTCTCGGAGGGCGTGCGGTGGCCCAATGGCATCTCTGTGGATGACCACTGGATCTACTGGACTGAGGCTTACATGGACAGGATTGAGAGGGTGGATTTCAATGGGTTGCAGAGATCTGTAATCCTGGACAGCCTCCCGCACCCCTATGCCATCGCTGTATTTAAG
Seq C2 exon
AAAACACGTGTCTGCCCAACCAGTACAGATGCTTCAATGGGAACTGCATCAACAGCATTTGGCAGTGTGACAACAACAATGACTGCGGGGACATGAGCGATGAGAAGAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_MULTIEX1-3/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=50.6),PF0005812=Ldl_recept_b=WD(100=47.0)
C2:
PF0005713=Ldl_recept_a=WD(100=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGAGTTCATCCTGTACGC
R:
GGCAGTTCTTCTCATCGCTCA
Band lengths:
284-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]