GgaEX0028344 @ galGal3
Exon Skipping
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18113515-18261399:+
Coord C1 exon
chr2:18113515-18113599
Coord A exon
chr2:18156032-18156139
Coord C2 exon
chr2:18261228-18261399
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTCTATTCTGTAGGTA
3' ss Score
9.82
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
ACATTACCCAAAGCAGTCCTTCACTACAGTGGCTGATACTCCAGAAAATCTACGTCTGAAGCAACAAAGTGAATTGCAGAGTCAG
Seq A exon
GTAAAATACAAAAGAGACTTTGAAGAAAGCAAAGGAAGAGGGTTCAGTATTGTGACCGATACGCCCGAGTTACAAAGACTGAAAAGGACTCAGGAACAAATCAGTAAT
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-3/19=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.347 C2=0.527
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=25.6),PF0088013=Nebulin=WD(100=53.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAAGCAGTCCTTCACTAC
R:
TCCAGGTCTTCTATCCATTTCAACT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]