GgaEX0028344 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18079269-18225701:+
Coord C1 exon
chr2:18079269-18079353
Coord A exon
chr2:18121785-18121892
Coord C2 exon
chr2:18225530-18225701
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTCTATTCTGTAGGTA
3' ss Score
9.82
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
ACATTACCCAAAGCAGTCCTTCACTACAGTGGCTGATACTCCAGAAAATCTACGTCTGAAGCAACAAAGTGAATTGCAGAGTCAG
Seq A exon
GTAAAATACAAAAGAGACTTTGAAGAAAGCAAAGGAAGAGGGTTCAGTATTGTGACCGATACGCCCGAGTTACAAAGACTGAAAAGGACTCAGGAACAAATCAGTAAT
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-'7-44,'7-8,12-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.257 C2=0.428
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAAGCAGTCCTTCACTAC
R:
TCCAGGTCTTCTATCCATTTCAACT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]