DreEX6026559 @ danRer10
Exon Skipping
Gene
ENSDARG00000021200 | nebl
Description
nebulette [Source:ZFIN;Acc:ZDB-GENE-050320-151]
Coordinates
chr2:21422207-21423739:-
Coord C1 exon
chr2:21423655-21423739
Coord A exon
chr2:21422953-21423060
Coord C2 exon
chr2:21422207-21422384
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTTTTTTTTCAGGTG
3' ss Score
13.18
5' ss Seq
AATGTATGC
5' ss Score
3.91
Exon sequences
Seq C1 exon
GCACTACCCAAAACAGACCTTTACTATAGTGGCAGACACTCCTGAAAACCTTCGACTGAGACAGCAAAGTGAGCTCCAAAGTCAG
Seq A exon
GTGAAATACAGGAAGGATTTTGAACAGAGCAAGGGACGGGGCCTCAAATTTGTCCTGGATACTCCTGAGCTACAGAGACTGAGGAAGGCCCAGGATCAGATCAGTAAT
Seq C2 exon
GCGAAATATCATAAGGACTTTGAGGTGTCAGGTCTGCAAGGGGTCACTCAGGGAATGCGTGGGACGTACGCGGTGCGATCTCAGATGACGCCGAACAATGAAACTGTGGCTAACAGCACACACAAGGCTGTACATCAGTACATTATGGAGATGGACCGAAGACCTGGTGTTATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021200-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.194 C2=0.417
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(59.3=44.4)
C2:
PF0088013=Nebulin=PD(33.3=15.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTACCCAAAACAGACCTT
R:
CAGGTCTTCGGTCCATCTCCA
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]