GgaEX1033110 @ galGal4
Exon Skipping
Gene
ENSGALG00000001648 | LASP1
Description
LIM and SH3 domain protein 1 [Source:RefSeq peptide;Acc:NP_001170800]
Coordinates
chr27:4061629-4067603:+
Coord C1 exon
chr27:4061629-4061713
Coord A exon
chr27:4065509-4065616
Coord C2 exon
chr27:4067453-4067603
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGATCCCACCCAGATT
3' ss Score
6.6
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
ACACTACCCGAAGCAATCCTTCACCATGGTGGCAGACACTCCCGAGAACCTGCGCCTAAAGCAGCAGAGCGAGCTGCAGAGCCAG
Seq A exon
ATTCGCTACAAGGAGGAGTTTGAGAAGAACAAGGGGAAAGGCTTCAGCGTGGTGGCCGACACCCCGGAGCTGCAGAGAATCAAAAAGACTCAGGATCAGATCAGCAAC
Seq C2 exon
ATCAAATACCATGAAGAGTTTGAGAGGAGCAGGATGGGCCCCAGCCCCAGCGAGGGCGCAGAGATGGAGCGCAGGAACTCCCAGGAAAGCGCCAATTACCGACGGCCGGAGCAGCACCAACCACAGCACCACGTCCAGCCCAGCAACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001648_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=0.861 C2=1.000
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(15.4=20.7),PF0088013=Nebulin=PU(55.2=55.2)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTACCCGAAGCAATCCTT
R:
GTTGCTGGGCTGGACGTG
Band lengths:
232-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]