BtaEX6088260 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030587 | LASP1
Description
Bos taurus LIM and SH3 protein 1 (LASP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035394]
Coordinates
chr19:40107482-40125357:+
Coord C1 exon
chr19:40107482-40107566
Coord A exon
chr19:40114701-40114808
Coord C2 exon
chr19:40125210-40125357
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCACCACCTTGGTCCTCCAGGTA
3' ss Score
9.29
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
ACACTACCCCAAGCAGTCCTTCACCATGGTGGCTGACACCCCGGAAAACCTCCGCCTCAAGCAACAGAGTGAGCTGCAGAGTCAG
Seq A exon
GTACGCTACAAGGAGGAGTTTGAGAAGAACAAGGGCAAAGGCTTCAGCGTGGTGGCAGACACGCCCGAGCTCCAGAGAATCAAGAAGACCCAGGACCAGATCAGTAAT
Seq C2 exon
ATAAAATACCACGAGGAGTTTGAGAAGAGTCGCATGGGTCCCAGTGGTGGTGAGGGTCTGGAGTGCGAGCGCCGAGATCCCCAGGAGAGCAGCTACCGGCGGCCCCAGGAGCAGCAGCAGCCTCACCACATCCCCGCCAGCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030587-'16-8,'16-3,17-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=0.667 C2=1.000
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=22.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTACCCCAAGCAGTCCTT
R:
GGATGTGGTGAGGCTGCTG
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]