RnoEX0049486 @ rn6
Exon Skipping
Gene
ENSRNOG00000004132 | Lasp1
Description
LIM and SH3 protein 1 [Source:RGD Symbol;Acc:68408]
Coordinates
chr10:85761063-85779554:+
Coord C1 exon
chr10:85761063-85761147
Coord A exon
chr10:85770284-85770391
Coord C2 exon
chr10:85779398-85779554
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTCTTGGCCTCCAGGTG
3' ss Score
11.39
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
ACACTACCCCAAGCAGTCCTTCACCATGGTGGCCGACACTCCGGAGAACCTCCGCCTGAAGCAACAGAGCGAGCTGCAGAGTCAG
Seq A exon
GTGCGTTACAAGGAGGAGTTTGAGAAGAACAAGGGCAAAGGCTTCAGTGTGGTGGCAGACACGCCTGAACTGCAGAGAATCAAGAAGACCCAGGACCAGATCAGCAAT
Seq C2 exon
ATCAAATACCATGAGGAGTTTGAGAAGAGCCGCATGGGGCCCAGCGGAGGTGAAGGCATAGAGCCAGAGCGCCGAGAAGCCCAGGACAGCAGCAGCTACCGGAGGCCCACGGAGCAGCAACAGCCACAGCCCCACCATATCCCGACCAGTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004132-'21-11,'21-8,23-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.778 C2=1.000
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTACCCCAAGCAGTCCTT
R:
ACTGGTCGGGATATGGTGGG
Band lengths:
235-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]