DreEX6015701 @ danRer10
Exon Skipping
Gene
ENSDARG00000057867 | lasp1
Description
LIM and SH3 protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1936]
Coordinates
chr3:15930860-15937135:-
Coord C1 exon
chr3:15937051-15937135
Coord A exon
chr3:15934971-15935078
Coord C2 exon
chr3:15930860-15930944
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTGCAGGTG
3' ss Score
12.78
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACACTATCCGAAGACATCTTTCACCAGTGTTGCGGACACTCCGGAGAACCTGCGTCTGAAACAACAAAGCAAGATGCAGAGCCAG
Seq A exon
GTGCTCTACAAGGAGGAGTTTGAGAAGAACAAGGGAAAGGGCTTCAGTGTTGTGGCCGACACACCAGAGTTGCAGAGAATCAAGAAAACACAAGACCAAATCAGCAAC
Seq C2 exon
ATTAAATACCATGAGGACTTTGAGAAGAGCCGAAGTGGAGGGGACACCCCGCTCCCACTGACACCTCAACTAAACACACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057867-'8-7,'8-5,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=0.481 C2=0.966
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTATCCGAAGACATCTTTCACC
R:
CTGGAGGTGTGTTTAGTTGAGGT
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]