GgaEX0028395 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23734914-23735448:+
Coord C1 exon
chr2:23734914-23734967
Coord A exon
chr2:23735070-23735177
Coord C2 exon
chr2:23735395-23735448
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGCATTCCCTTATTCTCAGGGT
3' ss Score
7.69
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGCAATCCTGGAAATGATGGTCCTCCAGGCCGTGATGGTGCTCCTGGCTTCAAG
Seq A exon
GGTGAGCGTGGTGCTCCTGGTAACCCAGGTCCCAGTGGTGCTTTGGGTGCTCCTGGTCCTCATGGCCAAGTTGGTCCTTCTGGAAAGCCTGGAAACCGTGGTGATCCT
Seq C2 exon
GGTCCTGTTGGTCCTGTTGGTCCTGCTGGTGCTTTTGGCCCAAGAGGTCTCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641-'63-52,'63-51,64-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.6=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATCCTGGAAATGATGGTC
R:
CGAGACCTCTTGGGCCAAAAG
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]