GgaEX0028537 @ galGal4
Exon Skipping
Gene
ENSGALG00000016155 | COL19A1
Description
collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2196]
Coordinates
chr3:82387229-82417513:-
Coord C1 exon
chr3:82417469-82417513
Coord A exon
chr3:82397567-82397620
Coord C2 exon
chr3:82387229-82387282
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTGCATGTTTATTCTTTTAGGGT
3' ss Score
9.42
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTGAACATGGCCTTCCTGGTAGTAAAGGGGAAGAAGGTGAAAAG
Seq A exon
GGTGAAAAAGGAGAAAAAGGAGAACCAGGACCAGAAGGCATTCATGGAAGAGAG
Seq C2 exon
GGACTAAAAGGTGACCCTGGTAGTCCTGGTGTGGCTGGTCCTAAAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016155_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100),PF0139113=Collagen=PU(21.9=93.3)
A:
PF0139113=Collagen=PD(5.0=16.7),PF0139113=Collagen=FE(26.6=100)
C2:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=PU(3.3=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACATGGCCTTCCTGGTA
R:
TCTCCTTTAGGACCAGCCACA
Band lengths:
94-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]