GgaEX0028537 @ galGal3
Exon Skipping
Gene
ENSGALG00000016155 | COL19A1
Description
NA
Coordinates
chr3:85744165-85774451:-
Coord C1 exon
chr3:85774407-85774451
Coord A exon
chr3:85754503-85754556
Coord C2 exon
chr3:85744165-85744218
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTGCATGTTTATTCTTTTAGGGT
3' ss Score
9.42
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTGAACATGGCCTTCCTGGTAGTAAAGGGGAAGAAGGTGAAAAG
Seq A exon
GGTGAAAAAGGAGAAAAAGGAGAACCAGGACCAGAAGGCATTCATGGAAGAGAG
Seq C2 exon
GGACTAAAAGGTGACCCTGGTAGTCCTGGTGTGGCTGGTCCTAAAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016155_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(24.1=100),PF0139113=Collagen=FE(20.9=100)
A:
PF0139113=Collagen=PD(1.7=5.6),PF0139113=Collagen=FE(25.4=100)
C2:
PF0139113=Collagen=FE(25.4=100),PF0139113=Collagen=PU(3.3=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACATGGCCTTCCTGGTA
R:
TCTCCTTTAGGACCAGCCACA
Band lengths:
94-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]