MmuEX0012180 @ mm10
Exon Skipping
Gene
ENSMUSG00000026141 | Col19a1
Description
collagen, type XIX, alpha 1 [Source:MGI Symbol;Acc:MGI:1095415]
Coordinates
chr1:24453744-24508228:-
Coord C1 exon
chr1:24508184-24508228
Coord A exon
chr1:24461476-24461529
Coord C2 exon
chr1:24453744-24453797
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTAAATTATTTCTTTCCAGGGT
3' ss Score
8.63
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GGAGAACAAGGACTTGAAGGCATCAAGGGAGAAATTGGTGAAAAG
Seq A exon
GGTGAACCAGGAGCCAAAGGAGACTCTGGTCTGGATGGCCTCAATGGACAAGAT
Seq C2 exon
GGTTTGAAAGGTGACTCGGGTCCTCAAGGTCCACCTGGCCCAAAAGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026141_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.7=100),PF0139113=Collagen=PU(14.5=60.0)
A:
PF0139113=Collagen=PD(10.2=33.3),PF0139113=Collagen=FE(27.4=100)
C2:
PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACAAGGACTTGAAGGCA
R:
CTTGTCTCCTTTTGGGCCAGG
Band lengths:
99-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types