MmuEX0012179 @ mm10
Exon Skipping
Gene
ENSMUSG00000026141 | Col19a1
Description
collagen, type XIX, alpha 1 [Source:MGI Symbol;Acc:MGI:1095415]
Coordinates
chr1:24461476-24510887:-
Coord C1 exon
chr1:24510843-24510887
Coord A exon
chr1:24508184-24508228
Coord C2 exon
chr1:24461476-24461529
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACCATGCTCTTCATTTACAGGGA
3' ss Score
10.49
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GGTGAACATGGCTTAGATGGTACTCCAGGATTACCTGGTCAAAAG
Seq A exon
GGAGAACAAGGACTTGAAGGCATCAAGGGAGAAATTGGTGAAAAG
Seq C2 exon
GGTGAACCAGGAGCCAAAGGAGACTCTGGTCTGGATGGCCTCAATGGACAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026141-'14-11,'14-9,15-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.7=100)
A:
PF0139113=Collagen=FE(23.7=100),PF0139113=Collagen=PU(14.5=60.0)
C2:
PF0139113=Collagen=PD(10.2=33.3),PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACATGGCTTAGATGGT
R:
TGTCCATTGAGGCCATCCAGA
Band lengths:
95-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types