RnoEX6039131 @ rn6
Exon Skipping
Gene
ENSRNOG00000012759 | Col19a1
Description
collagen type XIX alpha 1 chain [Source:RGD Symbol;Acc:1308920]
Coordinates
chr9:30727554-30769716:-
Coord C1 exon
chr9:30769672-30769716
Coord A exon
chr9:30765134-30765178
Coord C2 exon
chr9:30727554-30727607
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACCATGCTCTTCTTTTACAGGGA
3' ss Score
11.43
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGTGAAAATGGTTTACATGGAACTCCAGGATTACCTGGTCAAAAG
Seq A exon
GGAGAACAAGGACTCGAAGGCATCAAAGGAGACATTGGTGAAAAG
Seq C2 exon
GGTGAACCAGGAGCCAAAGGAGACACTGGTCTGGCTGGCCTTAATGGACAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012759-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.7=100)
A:
PF0139113=Collagen=FE(12.7=100)
C2:
PF0139113=Collagen=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAATGGTTTACATGGAACTCC
R:
GTCCATTAAGGCCAGCCAGAC
Band lengths:
94-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]