GgaEX0028718 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10164639-10178647:+
Coord C1 exon
chr6:10164639-10165017
Coord A exon
chr6:10168277-10168375
Coord C2 exon
chr6:10178555-10178647
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTAAAACTGCATTTATTAGGAA
3' ss Score
3.08
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CTCGGACCAATGTAGGGACTCTGTTACCTCATATGTCAAAGGAGAAGCAGGGAAGCCAGAAACAAATGGAAGCCTCTCAGAAACCACAACAGAAACAAAAACTAAATCCTATGTCCAGGAATCTTTAAATGACGTGGGAAAACACAGTGACAAAGAAGCCCTGAAAACAAAGTCCCAGATTTCAGCTGGTACTGATGAGCAAACGTTATCATCAACAGCATATCAGAAATCTTTGGAAGAGACTAGCAAGCCAACAACAGAAGGCAACAAAACATCTGTGCCCGTCAGTGTGAAGAAGATGGGCTGGAGTACTTCAGAGGATGGCAAGGCAAGAGCAGGCATCCAAGAGGAGGAGGGAGCAGGAATGTCTGAGCAGAAG
Seq A exon
GAATGTAGTGACAGTGACAGTGAGATTGAGAGTGATTCGAGCTCAGGTGAGGAGCAGAGGATTACTACAAGAGTGTATCGACGGCGGTTGATTCTGAAG
Seq C2 exon
CAGGGCGAAGCTTACAAGGTTAAGACAAAGAAAGAAGTCAGACACGTGGAGAAGAAAAGTTACTCGTGAAAGCTGAAAGCCAACCACTGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_MULTIEX1-1/3=C1-C2
Average complexity
ME(1-3[100=100])
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.818 C2=0.881
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTGGAGTACTTCAGAGG
R:
GTCAGTGGTTGGCTTTCAGCT
Band lengths:
171-270
Functional annotations
There are 1 annotated functions for this event
PMID: 21223964
Ankyrins-G coimmunoprecipitated with plectin and filamin C from skeletal muscle tissue extracts. Muscle-specific OTBD domain (coordinated inclusion of MmuEX1003810, MmuEX1003809, MmuEX0004908) is required for ankyrin-G binding to plectin and filamin C. Isoforms are differentially expressed during myogenesis.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]