GgaEX0028854 @ galGal3
Exon Skipping
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16929081-16932306:-
Coord C1 exon
chr7:16932235-16932306
Coord A exon
chr7:16930409-16932148
Coord C2 exon
chr7:16929081-16929155
Length
1740 bp
Sequences
Splice sites
3' ss Seq
TCTTATCCTGTATTCAACAGGCT
3' ss Score
8.79
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGTTATGGATCTGGAAGTGGAAGTGGGGGCTATGGTGGTAGAAGATTCTAAAAATGCTACCAGAAAAAGG
Seq A exon
GCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCCAAATGCATTAGAGGAACTGTAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGCAATGTAGTGTCGATTAGATGTACATTCCTGAGGTCTTTATCTGTTGTAGCTTTGTCTTTCTTTTTTCTTTTTATTTTCCCATTACATCAGGTATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAACAAATTAAGGAATTTTTAACTTTTCAATATTTGTGTAGTTCAGTTCTTCCACATTTGGTACAGAGAACTCTATAACAGAAATAAAATGTAGTTTAGGGTGTTTCCTTGTTAGTAGAGAAGATTAATGCATTTCTCAATTACTATTTTGTATTAATTTAAAGTTAACAATAGAAACACCTATTGATTTGCAGTCTTAAGGGGTCTAGTCTCAGTGTATATATGTAACTGTCATTGATAAGAGTTACATAGGCATACAGAGGGAGAACATCTGTATGTTGCATTATAGTTTGTTTAGATGTATAACTAGGATTGAGTTACTCAAATTAGTGTTTGTGAATTATAGAACTAAGCTTTACCTTCAAATGAAAATTTCAAATTACTTTTTGGTTTGTGCATATTTTTTTAATTTGTAGTTCTGTATTAGTAGTAGCGCTTCAAGAAAATAAGGCATGATAAATATTTTAACAAGACCAACTTTAGTCACATTCAAGCTGTCTCCAGTCTCATTTGAGATGTATAAGGGATAACTGCAGTTGCTGAAGTTCTGGGTGAAGAGAAAAAGACATTTGCTTTTTACCTTTTTATTTATTGTAATTCCCGAGAAGTTAAGGTGGGGTGGGAATCAAGTGCCTGTTTCCTTGGGATATACAATGATTCTGTTTCAATAAAACTATACCTTGGGGAGGGTGGCTTGGGATTTTCATCCCCTTCCTTTCTCCCCTCTCCCCTCTCCCTCACACCGGACTGTGCTGTTTCAATTAAATGAGGCATCATAGCGAGAGTAATAGGTATGTTCCTAAATAACTTAATGGCTATATACTTTCTTGCATGCACCCTAGGCAATTTTCTGGACACATTCATCTGACTGGGAGCCAAGGGTAGCACAGGTGTAATCACTGACAGTCCCAGGTAATGGCGTTCCAGAAGCCCGTTCACGATGGGCTCTAAGTAGCATAGCTTTCAAGCTTTTTCCCTTACGAATATCTAAGCTCAGGTAAGAGCTTGAGAACGAAACAAAACACAATCTAGTTATATTTTACTGACCAGTAATGCTTCCCACAGCATAGAATGGTACAGTTTTAAATTTCCGGAGGTAGAACGATAGTGTTTTACAGTTTGATTTGATGCACTGGAGTAGCAAATCTTATCAGCACATCTGGCTAGAAATTGTACTCAATTCTCATTACTGAACTCCAAATTAAGGCAATACGATCTCTGCTTTTCTCAGCTGATGCCACTTCTCTCTCAACTATTGCCAGGACAGTGCTTTCTGACAATTGAGACTCAGAAGAGTAGGGACACAGTCAATAGAAGAAATGTTCAGACACATGACAATATGTGATATTGGAAATTACACCTGTTTCACTTCTGGGTCAATGTGCAGTATAAG
Seq C2 exon
GTTGAATGAGAAGCTGCTGCTTGACAAAATGGGGAATGTCTTGCACATCCTCTTCAATTGAAGGTTTCTGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]