GgaINT0048006 @ galGal3
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16929081-16932306:-
Coord C1 exon
chr7:16932235-16932306
Coord A exon
chr7:16929156-16932234
Coord C2 exon
chr7:16929081-16929155
Length
3079 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
GTAATTTCTTTAATTTTCAGGTT
3' ss Score
10.08
Exon sequences
Seq C1 exon
GTGGTTATGGATCTGGAAGTGGAAGTGGGGGCTATGGTGGTAGAAGATTCTAAAAATGCTACCAGAAAAAGG
Seq A exon
GTAGGTGTAATGCATATTTCTAATGATGATGAATGATGTGCAACTGTTCACTGAGAGTAATAATTTTCTTATCCTGTATTCAACAGGCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCCAAATGCATTAGAGGAACTGTAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGCAATGTAGTGTCGATTAGATGTACATTCCTGAGGTCTTTATCTGTTGTAGCTTTGTCTTTCTTTTTTCTTTTTATTTTCCCATTACATCAGGTATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAACAAATTAAGGAATTTTTAACTTTTCAATATTTGTGTAGTTCAGTTCTTCCACATTTGGTACAGAGAACTCTATAACAGAAATAAAATGTAGTTTAGGGTGTTTCCTTGTTAGTAGAGAAGATTAATGCATTTCTCAATTACTATTTTGTATTAATTTAAAGTTAACAATAGAAACACCTATTGATTTGCAGTCTTAAGGGGTCTAGTCTCAGTGTATATATGTAACTGTCATTGATAAGAGTTACATAGGCATACAGAGGGAGAACATCTGTATGTTGCATTATAGTTTGTTTAGATGTATAACTAGGATTGAGTTACTCAAATTAGTGTTTGTGAATTATAGAACTAAGCTTTACCTTCAAATGAAAATTTCAAATTACTTTTTGGTTTGTGCATATTTTTTTAATTTGTAGTTCTGTATTAGTAGTAGCGCTTCAAGAAAATAAGGCATGATAAATATTTTAACAAGACCAACTTTAGTCACATTCAAGCTGTCTCCAGTCTCATTTGAGATGTATAAGGGATAACTGCAGTTGCTGAAGTTCTGGGTGAAGAGAAAAAGACATTTGCTTTTTACCTTTTTATTTATTGTAATTCCCGAGAAGTTAAGGTGGGGTGGGAATCAAGTGCCTGTTTCCTTGGGATATACAATGATTCTGTTTCAATAAAACTATACCTTGGGGAGGGTGGCTTGGGATTTTCATCCCCTTCCTTTCTCCCCTCTCCCCTCTCCCTCACACCGGACTGTGCTGTTTCAATTAAATGAGGCATCATAGCGAGAGTAATAGGTATGTTCCTAAATAACTTAATGGCTATATACTTTCTTGCATGCACCCTAGGCAATTTTCTGGACACATTCATCTGACTGGGAGCCAAGGGTAGCACAGGTGTAATCACTGACAGTCCCAGGTAATGGCGTTCCAGAAGCCCGTTCACGATGGGCTCTAAGTAGCATAGCTTTCAAGCTTTTTCCCTTACGAATATCTAAGCTCAGGTAAGAGCTTGAGAACGAAACAAAACACAATCTAGTTATATTTTACTGACCAGTAATGCTTCCCACAGCATAGAATGGTACAGTTTTAAATTTCCGGAGGTAGAACGATAGTGTTTTACAGTTTGATTTGATGCACTGGAGTAGCAAATCTTATCAGCACATCTGGCTAGAAATTGTACTCAATTCTCATTACTGAACTCCAAATTAAGGCAATACGATCTCTGCTTTTCTCAGCTGATGCCACTTCTCTCTCAACTATTGCCAGGACAGTGCTTTCTGACAATTGAGACTCAGAAGAGTAGGGACACAGTCAATAGAAGAAATGTTCAGACACATGACAATATGTGATATTGGAAATTACACCTGTTTCACTTCTGGGTCAATGTGCAGTATAAGGTAAATGCAATTCCAGTGTAGGAATGAATCTGCAAAGATGTATGAAATGGCTTAAGGCATAATCAGTCATATTAATATAATTTTAAGAAGTTATTAGAAAAATGAGTGTGTTGCTTGGAAAAAAAAAAATTAAACGATGTTATTTGAACACTGTTATTGAGTGTATTTAGACTGCAGTACACTAAAACAAGGAACCACTGTCAAGATGTTAGCCTCCAAACTGGATTTGCAAAGTCTGCTTATTCTTTTCTGTGGCGTTTTAAACTATCTCTAACTTAAAAGCGAGAATTGCCGATGCAGTGAACGTTTTGTTGTTGTACATAATTTGGGCTTGTGGGGAGGGCGGGTGGGGGAAGGCTGTATTTCAATAAAGGCATCTTTTTAAACAACCCACTCGGAGTTTGAAAACACACGAAAAACTAAACCATCTCCCTAGGGAGTGAGCCACCCAACTGCTGACTTGCTTTGTACGTTGCTACACTTAGAAGCTGTGTAGATTTGTAACTGGGGCCTGCATCTGGTTGCAGGGACAACTGGAGAATGGGGTCGATGTCCCTTCTGAAAATGGATATGGTATTTCTGAAAGTTTTAGAATGTATTGACAGTGTTCTTTTTAACAGGGCCTCTTGTAGCTGTACTGTGACAACAATGTTAACTTTGAAAAATAGTGTCATAATAAACTTTATGAACAAGATCTGTATGCAACCTTTTAAGAGATGGAGTGTGTAAGTGACCGCTGTGTAGGTGGGTGGGGTAGCTTAGCTGTTGTTTGTGATGTGGAAAAGTGTAAGCTGTGAGGACAGTGATTAACCGGTTTTAAAGAACCTAGGATGTACTTCTTTGATCCGTACTTTGTTAAGGAGACCCTAAGACAGGAAGGACTTCAGCAGCCTTTTGAGTATGGAGAAGTCAGCATAATTAAAGAATGACAAGGCAGCAGGAGCGACAGCTTCAACTTCCAGAAAAGTGAAGGCATAAGATACTGTGCTGATAGTGAGCAGCTTTCCAAAGTCTAGTTAAATCTGCTTATCACAGCTGAAATATCGAAGAAAGTCTAGCAAGAGTTCTTCACCTTTTGGAACCTCCTTGAGTGATAGCTACTTGAGTTGACTCAAAATCAATAGGTCTAGCATTTAGACCTGAAAGGAAGGGCAATGAGCATAGGTAAGGTTTGCCTTTAAAATTTTTCATGAATTAAAAAGAGTGGTTGGAGGTTTTGAAAACAAGGTAAGAGTAATTTCTTTAATTTTCAG
Seq C2 exon
GTTGAATGAGAAGCTGCTGCTTGACAAAATGGGGAATGTCTTGCACATCCTCTTCAATTGAAGGTTTCTGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]