GgaINT0048006 @ galGal4
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15327805-15330025:-
Coord C1 exon
chr7:15329954-15330025
Coord A exon
chr7:15329868-15329953
Coord C2 exon
chr7:15327805-15329867
Length
86 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TCTTATCCTGTATTCAACAGGCT
3' ss Score
8.79
Exon sequences
Seq C1 exon
GTGGTTATGGATCTGGAAGTGGAAGTGGGGGCTATGGTGGTAGAAGATTCTAAAAATGCTACCAGAAAAAGG
Seq A exon
GTAGGTGTAATGCATATTTCTAATGATGATGAATGATGTGCAACTGTTCACTGAGAGTAATAATTTTCTTATCCTGTATTCAACAG
Seq C2 exon
GCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCCAAATGCATTAGAGGAACTGTAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGCAATGTAGTGTCGATTAGATGTACATTCCTGAGGTCTTTATCTGTTGTAGCTTTGTCTTTCTTTTTTCTTTTTATTTTCCCATTACATCAGGTATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAACAAATTAAGGAATTTTTAACTTTTCAATATTTGTGTAGTTCAGTTCTTCCACATTTGGTACAGAGAACTCTATAACAGAAATAAAATGTAGTTTAGGGTGTTTCCTTGTTAGTAGAGAAGATTAATGCATTTCTCAATTACTATTTTGTATTAATTTAAAGTTAACAATAGAAACACCTATTGATTTGCAGTCTTAAGGGGTCTAGTCTCAGTGTATATATGTAACTGTCATTGATAAGAGTTACATAGGCATACAGAGGGAGAACATCTGTATGTTGCATTATAGTTTGTTTAGATGTATAACTAGGATTGAGTTACTCAAATTAGTGTTTGTGAATTATAGAACTAAGCTTTACCTTCAAATGAAAATTTCAAATTACTTTTTGGTTTGTGCATATTTTTTTAATTTGTAGTTCTGTATTAGTAGTAGCGCTTCAAGAAAATAAGGCATGATAAATATTTTAACAAGACCAACTTTAGTCACATTCAAGCTGTCTCCAGTCTCATTTGAGATGTATAAGGGATAACTGCAGTTGCTGAAGTTCTGGGTGAAGAGAAAAAGACATTTGCTTTTTACCTTTTTATTTATTGTAATTCCCGAGAAGTTAAGGTGGGGTGGGAATCAAGTGCCTGTTTCCTTGGGATATACAATGATTCTGTTTCAATAAAACTATACCTTGGGGAGGGTGGCTTGGGATTTTCATCCCCTTCCTTTCTCCCCTCTCCCCTCTCCCTCACACCGGACTGTGCTGTTTCAATTAAATGAGGCATCATAGCGAGAGTAATAGGTATGTTCCTAAATAACTTAATGGCTATATACTTTCTTGCATGCACCCTAGGCAATTTTCTGGACACATTCATCTGACTGGGAGCCAAGGGTAGCACAGGTGTAATCACTGACAGTCCCAGGTAATGGCGTTCCAGAAGCCCGTTCACGATGGGCTCTAAGTAGCATAGCTTTCAAGCTTTTTCCCTTACGAATATCTAAGCTCAGGTAAGAGCTTGAGAACGAAACAAAACACAATCTAGTTATATTTTACTGACCAGTAATGCTTCCCACAGCATAGAATGGTACAGTTTTAAATTTCCGGAGGTAGAACGATAGTGTTTTACAGTTTGATTTGATGCACTGGAGTAGCAAATCTTATCAGCACATCTGGCTAGAAATTGTACTCAATTCTCATTACTGAACTCCAAATTAAGGCAATACGATCTCTGCTTTTCTCAGCTGATGCCACTTCTCTCTCAACTATTGCCAGGACAGTGCTTTCTGACAATTGAGACTCAGAAGAGTAGGGACACAGTCAATAGAAGAAATGTTCAGACACATGACAATATGTGATATTGGAAATTACACCTGTTTCACTTCTGGGTCAATGTGCAGTATAAGGTAAATGCAATTCCAGTGTAGGAATGAATCTGCAAAGATGTATGAAATGGCTTAAGGCATAATCAGTCATATTAATATAATTTTAAGAAGTTATTAGAAAAATGAGTGTGTTGCTTGGAAAAAAAAAAATTAAACGATGTTATTTGAACACTGTTATTGAGTGTATTTAGACTGCAGTACACTAAAACAAGGAACCACTGTCAAGATGTTAGCCTCCAAACTGGATTTGCAAAGTCTGCTTATTCTTTTCTGTGGCGTTTTAAACTATCTCTAACTTAAAAGCGAGAATTGCCGATGCAGTGAACGTTTTGTTGTTGTACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGGCTATGGTGGTAGAA
R:
TCATCGTTCCTTCTGTGGCAG
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]