BtaINT0072906 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021580 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:19700523-19700880:-
Coord C1 exon
chr2:19700811-19700880
Coord A exon
chr2:19700717-19700810
Coord C2 exon
chr2:19700523-19700716
Length
94 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TATCCTGTATTATTCAACAGGCT
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTCTAAAAACTCAGAAGAAAAGG
Seq A exon
GTAGGTATCTTTTAAGTTTCTGTAATGATGATAAACGAATATGTGGAATTGTTCACTGAGTGTAATAATTTTTTTATCCTGTATTATTCAACAG
Seq C2 exon
GCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCCAAATGCGTTAGAGGAACTGTAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021580:ENSBTAT00000028757:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGGAAGTGGTGGATA
R:
CATCGTTCCTTCTGTGGCAGA
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]