HsaINT1015766 @ hg38
Intron Retention
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:177219247-177220085:+
Coord C1 exon
chr2:177219247-177219314
Coord A exon
chr2:177219315-177219407
Coord C2 exon
chr2:177219408-177220085
Length
93 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TATCCTGTATTATTCAACAGGCT
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTCTAAAAACAGCAGAAAAGG
Seq A exon
GTAGGTATCTTTAAATTTTTATTATGATGATAAAAGAATATGTGGAACTGTTCACTGAGTGTAATAATTTTTTTATCCTGTATTATTCAACAG
Seq C2 exon
GCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCCAAATGCATTAGAGGAACTGTAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGCAATGTAGTGTCAATTAGATGTACATTCCTGAGGTCTTTTATCTGTTGTAGCTTTGTCTTTTTCTTTTTCTTTTCATTACATCAGGTATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAAAAATTAAGGAATTTTTAACTTTTCAATATTTGTGTAGTTCAGTTTTTCTACATTTTAGTACAGAAACTTTAACAAAATGCAGTTTCGAAGGTGTTTCCTTGTGAGTTAACAAGTAAAGAAGATCATTGTTAATTACTATTTTGTATGAATTTTGCTAAAGTTAACTGTAAAGAAACACCTGCTGACTTGCAGTTTAAGGGGAATCTATTCTCCCCATTTCCAAACCATGATATGAATGGGCGCTGACATGTGGAGAGAATAGATAATTTGTGTGTTTGCAATGTGTGTTTTAGATAAATAGGATTGGGTATTTAAATTAGCATTTGTGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144:ENST00000392524:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF116273=HnRNPA1=PD(2.6=5.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGGAAGTGGTGGATA
R:
CATCGTTCCTTCTGTGGCAGA
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains