GgaEX0028910 @ galGal4
Exon Skipping
Gene
ENSGALG00000007511 | ITGB2
Description
integrin beta-2 precursor [Source:RefSeq peptide;Acc:NP_990582]
Coordinates
chr7:7176640-7177656:-
Coord C1 exon
chr7:7177412-7177656
Coord A exon
chr7:7176927-7177146
Coord C2 exon
chr7:7176640-7176845
Length
220 bp
Sequences
Splice sites
3' ss Seq
GAAAACCTTTCCCATCACAGAGC
3' ss Score
6.63
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTGCAATTTGAGCTACACGGGGAAGAACTGTGAGTGTGACACCAAAGGCAAGACCAGCAAAGAGCTGGAGGGCAGCTGCCGGAAGGACAACAGCTCAGTCATCTGCTCAGGGCTGGGGGACTGCGTGTGTGGGCAGTGCGTCTGCCACACCAGTGACGTACCTGGCAAGGAGATCTATGGCACCTTCTGCGACTGTGACAACATGAACTGCGAGTTTCACAACGGCTCACTGTGTGGTGGCGAGG
Seq A exon
AGCGTGGACGATGCGACTGTGGTGAGTGCAAGTGCACACCCAAGTACGAGGGCAGTGCCTGCCAATGCAAGAAGTCGACTGATGGCTGTAGGAACAGCCGGCAAAATGAATGCAGCCTGCGTGGCTCCTGCCACTGCAACCGCTGCCAGTGCCGAGGGGGCTACCAGCCCCCCTTCTGCGAGGAGTGTCCTGGCTGCCCCTCACCCTGTGGCAGGCACAT
Seq C2 exon
TTCCTGCGTGGAGTGCAAGTCATTCAATAGTGGGCCACTGGCAAAGAACTGCTCTGTGGCCTGCACCAGCATCCAGCTGGCTGATGAGCCACGGGCAGGGAGTCGGCAGTGCAAGGAGAAGGACTCTGAGAACTGCTGGATCTCTTTCTATATGGCCCAGGATGATGGAGAGGAGATGTACACCGTCACTGTTGACCCTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511-'18-22,'18-20,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(31.2=12.0),PF079748=EGF_2=WD(100=45.8)
A:
PF079748=EGF_2=WD(100=41.9),PF079657=Integrin_B_tail=PU(5.0=5.4)
C2:
PF079657=Integrin_B_tail=FE(86.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGACAACAGCTCAGTC
R:
GAGTCCTTCTCCTTGCACTGC
Band lengths:
292-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]